Seetharaman, J. Klein: search on Z-Library

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1

Prediction and Comparison of SalmonellaHuman and SalmonellaArabidopsis Interactomes

Sylvia Schleker, Javier Garcia-Garcia, Judith Klein-Seetharaman, Baldo Oliva

Journal:

Chemistry & Biodiversity

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

2

Alternative paths in HIV-1 targeted human signal transduction pathways

Sivaraman Balakrishnan, Oznur Tastan, Jaime Carbonell, Judith Klein-Seetharaman

Journal:

Year:

2009

Language:

english

File:

PDF, 2.05 MB

english, 2009

3

Lemon Juice: A potential source of Angiotensin Converting Enzyme antagonism for weight loss and insulin resistance

Tejpal, S., Bastie, C., Seetharaman, J. Klein

Journal:

Proceedings of The Nutrition Society

Year:

2018

File:

PDF, 195 KB

2018

4

[WORLD SCIENTIFIC Pacific Symposium on Biocomputing 2021 - Kohala Coast, Hawaii, USA (3 â 7 January 2021)] Biocomputing 2021 - Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience

Cowen, Lenore J., Klein-Seetharaman, Judith, Putnam, Hollie

File:

PDF, 183 KB

5

Dynamics in Rhodopsin

Judith Klein-Seetharaman

Journal:

Year:

2002

Language:

english

File:

PDF, 215 KB

english, 2002

6

Modulation of Compactness and Long-Range Interactions of Unfolded Lysozyme by Single Point Mutations

Julia Wirmer, Christian Schlörb, Judith Klein-Seetharaman, Ryoma Hirano, Tadashi Ueda, Taiji Imoto, Harald Schwalbe

Journal:

Angewandte Chemie

Year:

2004

Language:

english

File:

PDF, 242 KB

english, 2004

7

Modulation of Compactness and Long-Range Interactions of Unfolded Lysozyme by Single Point Mutations

Julia Wirmer, Christian Schlörb, Judith Klein-Seetharaman, Ryoma Hirano, Tadashi Ueda, Taiji Imoto, Harald Schwalbe

Journal:

Angewandte Chemie International Edition

Year:

2004

Language:

english

File:

PDF, 242 KB

english, 2004

8

The G Protein-Coupled Receptors Handbook. Edited by Lakshami A. Devi.

Judith Klein-Seetharaman

Journal:

Year:

2006

Language:

english

File:

PDF, 54 KB

english, 2006

9

ChemInform Abstract: Dynamics in Rhodopsin

Judith Klein-Seetharaman

Journal:

Year:

2002

File:

PDF, 23 KB

2002

10

BioSim—a biomedical character-based problem solving environment

Yang Cai, Ingo Snel, Betty Cheng, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman

Journal:

Future Generation Computer Systems

Year:

2005

Language:

english

File:

PDF, 674 KB

english, 2005

11

Systematic prediction of human membrane receptor interactions

Yanjun Qi, Harpreet K. Dhiman, Neil Bhola, Ivan Budyak, Siddhartha Kar, David Man, Arpana Dutta, Kalyan Tirupula, Brian I. Carr, Jennifer Grandis, Ziv Bar-Joseph, Judith Klein-Seetharaman

Journal:

Year:

2009

Language:

english

File:

PDF, 420 KB

english, 2009

12

The importance of valine 114 in ligand binding in β2-adrenergic receptor

Makoto Arakawa, Naveena Yanamala, Jasbir Upadhyaya, Andrew Halayko, Judith Klein-Seetharaman, Prashen Chelikani

Journal:

Protein Science

Year:

2010

Language:

english

File:

PDF, 628 KB

english, 2010

13

Protein classification based on text document classification techniques

Betty Yee Man Cheng, Jaime G. Carbonell, Judith Klein-Seetharaman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 370 KB

english, 2005

14

Evaluation of different biological data and computational classification methods for use in protein interaction prediction

Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 313 KB

english, 2006

15

Predisposition of the dark state of rhodopsin to functional changes in structure

Basak Isin, A. J. Rader, Harpreet Kaur Dhiman, Judith Klein-Seetharaman, Ivet Bahar

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.59 MB

english, 2006

16

Combined solid state and solution NMR studies of α,ɛ-15N labeled bovine rhodopsin

Karla Werner, Ines Lehner, Harpreet Kaur Dhiman, Christian Richter, Clemens Glaubitz, Harald Schwalbe, Judith Klein-Seetharaman, H. Gobind Khorana

Journal:

Journal of Biomolecular NMR

Year:

2007

Language:

english

File:

PDF, 365 KB

english, 2007

17

Isotope labeling of mammalian GPCRs in HEK293 cells and characterization of the C-terminus of bovine rhodopsin by high resolution liquid NMR spectroscopy

Karla Werner, Christian Richter, Judith Klein-Seetharaman, Harald Schwalbe

Journal:

Journal of Biomolecular NMR

Year:

2008

Language:

english

File:

PDF, 332 KB

english, 2008

18

Evolutionary insights from suffix array-based genome sequence analysis

Anindya Poddar, Nagasuma Chandra, Madhavi Ganapathiraju, K. Sekar, Judith Klein-Seetharaman, Raj Reddy, N. Balakrishnan

Journal:

Journal of Biosciences

Year:

2007

Language:

english

File:

PDF, 251 KB

english, 2007

19

NMR-Based Screening of Membrane Protein Ligands

Naveena Yanamala, Arpana Dutta, Barbara Beck, Bart Van Fleet, Kelly Hay, Ahmad Yazbak, Rieko Ishima, Alexander Doemling, Judith Klein-Seetharaman

Journal:

Chemical Biology & Drug Design

Year:

2010

Language:

english

File:

PDF, 796 KB

english, 2010

20

pH-dependent Interaction of Rhodopsin with Cyanidin-3-glucoside. 2. Functional Aspects

Kalyan C. Tirupula, Fernanda Balem, Naveena Yanamala, Judith Klein-Seetharaman

Journal:

Photochemistry and Photobiology

Year:

2009

Language:

english

File:

PDF, 333 KB

english, 2009

21

pH-dependent Interaction of Rhodopsin with Cyanidin-3-glucoside. 1. Structural Aspects

Naveena Yanamala, Kalyan C. Tirupula, Fernanda Balem, Judith Klein-Seetharaman

Journal:

Photochemistry and Photobiology

Year:

2009

Language:

english

File:

PDF, 529 KB

english, 2009

22

Additive Effects of Chlorin E6 and Metal Ion Binding on the Thermal Stability of Rhodopsin In Vitro

Fernanda Balem, Naveena Yanamala, Judith Klein-Seetharaman

Journal:

Photochemistry and Photobiology

Year:

2009

Language:

english

File:

PDF, 556 KB

english, 2009

23

Comparison of Stability Predictions and Simulated Unfolding of Rhodopsin Structures

Oznur Tastan, Esther Yu, Madhavi Ganapathiraju, Anes Aref, A. J. Rader, Judith Klein-Seetharaman

Journal:

Photochemistry and Photobiology

Year:

2007

Language:

english

File:

PDF, 830 KB

english, 2007

24

The current Salmonella-host interactome

Sylvia Schleker, Jingchun Sun, Balachandran Raghavan, Matthew Srnec, Nicole Müller, Mary Koepfinger, Leelavati Murthy, Zhongming Zhao, Judith Klein-Seetharaman

Journal:

PROTEOMICS - Clinical Applications

Year:

2012

Language:

english

File:

PDF, 194 KB

english, 2012

25

Retinitis pigmentosa associated with rhodopsin mutations: Correlation between phenotypic variability and molecular effects

Alessandro Iannaccone, David Man, Naushin Waseem, Barbara J. Jennings, Madhavi Ganapathiraju, Kevin Gallaher, Elisheva Reese, Shomi S. Bhattacharya, Judith Klein-Seetharaman

Journal:

Vision Research

Year:

2006

Language:

english

File:

PDF, 1.44 MB

english, 2006

26

A mixture of feature experts approach for protein-protein interaction prediction

Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 434 KB

english, 2007

27

Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors

Naveena Yanamala, Kalyan C Tirupula, Judith Klein-Seetharaman

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 2.10 MB

english, 2008

28

Transmembrane helix prediction using amino acid property features and latent semantic analysis

Madhavi Ganapathiraju, N Balakrishnan, Raj Reddy, Judith Klein-Seetharaman

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.02 MB

english, 2008

29

Membrane Protein Structure and Dynamics Volume 234 || Comparative Modeling of Lipid Receptors

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 258 KB

english, 2012

30

Membrane Protein Structure and Dynamics Volume 5305 ||

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 394 KB

english, 2012

31

Membrane Protein Structure and Dynamics Volume 234 || Predicting the Biological Activities Through QSAR Analysis and Docking-Based Scoring

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 333 KB

english, 2012

32

Membrane Protein Structure and Dynamics Volume 234 || Structure Prediction of G Protein-Coupled Receptors and Their Ensemble of Functionally Important Conformations

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 810 KB

english, 2012

33

Membrane Protein Structure and Dynamics Volume 234 || Quantification of Structural Distortions in the Transmembrane Helices of GPCRs

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 730 KB

english, 2012

34

The Optimal Fraction of Hydrophobic Residues Required to Ensure Protein Collapse

Jiangbo Miao, Judith Klein-Seetharaman, Hagai Meirovitch

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 497 KB

english, 2004

35

Dual role of interactions between membranous and soluble portions of helical membrane receptors for folding and signaling

Judith Klein-Seetharaman

Journal:

Trends in Pharmacological Sciences

Year:

2005

Language:

english

File:

PDF, 1.29 MB

english, 2005

36

Biodegradation of carbon nanotubes by eosinophil peroxidase

Alexander A. Kapralov, Weijong H. Feng, Fernando Torres Andon, Benedict J. Chambers, Judith Klein-Seetharaman, Alexander Star, Anna A. Shvedova, Bengt Fadeel, Valerian E. Kagan

Journal:

Toxicology Letters

Year:

2012

Language:

english

File:

PDF, 88 KB

english, 2012

37

Mechanistic Investigations of Horseradish Peroxidase-Catalyzed Degradation of Single-Walled Carbon Nanotubes

Allen, Brett L., Kotchey, Gregg P., Chen, Yanan, Yanamala, Naveena V. K., Klein-Seetharaman, Judith, Kagan, Valerian E., Star, Alexander

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 4.66 MB

english, 2009

38

Membrane Protein Structure and Dynamics || Identification of Motions in Membrane Proteins by Elastic Network Models and Their Experimental Validation

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

39

The Enzymatic Oxidation of Graphene Oxide

Kotchey, Gregg P., Allen, Brett L., Vedala, Harindra, Yanamala, Naveena, Kapralov, Alexander A., Tyurina, Yulia Y., Klein-Seetharaman, Judith, Kagan, Valerian E., Star, Alexander

Journal:

Year:

2011

Language:

english

File:

PDF, 4.30 MB

english, 2011

40

Membrane Protein Structure and Dynamics || Solution NMR Studies of Integral Polytopic α-Helical Membrane Proteins: The Structure Determination of the Seven-Helix Transmembrane Receptor Sensory Rhodopsin II, pSRII

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 669 KB

english, 2012

41

Membrane Protein Structure and Dynamics || Target Based Virtual Screening by Docking into Automatically Generated GPCR Models

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 662 KB

english, 2012

42

The Effect of Loops on the Structural Organization of α-Helical Membrane Proteins

Tastan, Oznur, Klein-Seetharaman, Judith, Meirovitch, Hagai

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 519 KB

english, 2009

43

Characterization of protein secondary structure

Ganapathiraju, M.K., Klein-Seetharaman, J., Balakrishnan, N., Reddy, R.

Journal:

IEEE Signal Processing Magazine

Year:

2004

Language:

english

File:

PDF, 1.29 MB

english, 2004

44

Human immunodeficiency virus type 1 Vpr: oligomerization is an essential feature for its incorporation into virus particles

Narasimhan J Venkatachari, Leah A Walker, Oznur Tastan, Thien Le, Timothy M Dempsey, Yaming Li, Naveena Yanamala, Alagarsamy Srinivasan, Judith Klein-Seetharaman, Ronald C Montelaro, Velpandi Ayyavoo

Journal:

Virology Journal

Year:

2010

Language:

english

File:

PDF, 2.24 MB

english, 2010

45

A minimal ligand binding pocket within a network of correlated mutations identified by multiple sequence and structural analysis of G protein coupled receptors

Moitra, Subhodeep, Tirupula, Kalyan C, Klein-Seetharaman, Judith, Langmead, Christopher

Journal:

Year:

2012

Language:

english

File:

PDF, 921 KB

english, 2012

46

Binding of Ca2+ to Glutamic Acid-Rich Polypeptides from the Rod Outer Segment

Haber-Pohlmeier, S., Abarca-Heidemann, K., Körschen, H.G., Dhiman, H. Kaur, Heberle, J., Schwalbe, H., Klein-Seetharaman, J., Kaupp, U.B., Pohlmeier, A.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 385 KB

english, 2007

47

Membrane Protein Structure and Dynamics || How to Investigate Interactions Between Membrane Proteins and Ligands by Solid-State NMR

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 581 KB

english, 2012

48

Membrane Protein Structure and Dynamics || Use of NMR Saturation Transfer Difference Spectroscopy to Study Ligand Binding to Membrane Proteins

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 376 KB

english, 2012

49

Membrane Protein Structure and Dynamics || Crystallization of Membrane Proteins in Bicelles

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 394 KB

english, 2012

50

Membrane Protein Structure and Dynamics || Vapor Diffusion-Controlled Meso Crystallization of Membrane Proteins

Vaidehi, Nagarajan, Klein-Seetharaman, Judith

Year:

2012

Language:

english

File:

PDF, 410 KB

english, 2012

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